Thanks for your email.
Did you click the Front Page checkbox in the assignment panel and select Header in the Location Hook drop-down box? This should add the code in the Header of the homepage.
We do know about some incompatibilities with WordPress version 3.5 (and higher) in regard to saving code templates. That said, we will be upgrading the core of the free version to our Premium CJT V6 version. It will be a total rewrite, much more stable, and have heaps more features and options. This should not be too far away. Please subscribe to our Twitter page for CJT news. https://twitter.com/CJToolbox
Could you please tell us if you still has this issue or if its resolved!
We just released versions 6.0 and 6.0.6 with much features and enhancements! There're a great number of new Block assignments right there.
Please check it out and let use know if the issue is solved!
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