I've used this plugin to create several custom post types on my site, which worked very well. Then I went to make the site live which involves switching from a temporary url, an ip address (12.345.678.90/~sample/), to my final domain (http://www.domain.com). I've done this many times and it requires me to switch the to primary urls under "Settings" > "General" (WordPress address (URL), and Site address (URL)). The final step I do is to run a sql query to replace the ip address with the final domain, so that all the URLs on the final site are clean and ready to go.
I did this successfully and the new site is live, everything works on the front-end and back-end of the site. Except the custom post types don't show up in the admin area anymore. The custom post types are still in the database and showing up on the front-end of the site, but GD custom posts and taxonomies tool doesn't see them anymore, and they don't show up on the left navigation.
Any thoughts on what would be tied to a URL switch that would make these custom post types disappear on the back-end?