First, and most importantly, THANK YOU for this awesome plugin!
My 'problem' is more an annoyance :) I have the Unpublished Content dashboard widget, happy, yay. It was showing 'x pending foo' and 'y Ready' but then ... '1 Draft'
Funny. I didn't have any posts in draft. And when I clicked on 'drafts' it showed me no posts. But I DID have a CPT in draft.
Looks like it picks those up from CPTs as well as regular posts, which is a small ish. I would possibly toss in a check for 'post type' as well :)