I have this recent comment plugin which for a while just seems to ignore the comments made with Disqus. Until I discovered the sync comments button, then the older comments made with Disqus did show up under the recent comments.
Any idea's why the automated sync doesn't work? The only way to get them into wordpress now, is to push the sync button manually. Its fine for now, but it kind of sucks if I would have to do that everyday :)