I installed an set up a blog completely error free in a sub directory. Then when I set the blog to display when typing in my root address, some pages are now going 404 on me. I followed all of the steps in "Giving WordPress It's Own Directry" http://codex.wordpress.org/Giving_WordPress_Its_Own_Directory like I've done several times before.
What is really weird is that some pages work, like example.com/about and some pages don't, like example.com/resources
All pages worked when they were in "core": example.com/core/resources
Of course they work fine like example.com/?p=10 and sadly they work with example.com/index.php/resources
The website in question is here: http://www.intlappraisal.com
The pages that don't work are Appraisal, and Resources, and a few of the blog posts that are in the category "Newsletter".