Ah, correct. This is what's before the loop (at least what I think is necessary):
query_posts($args);
query_posts('cat=-334');
$home_content = get_option('woo_home_content');
$home_boxes = get_option('woo_home_boxes');
if (have_posts()) :
$full = FALSE;
$width = get_option('woo_full_thumb_width');
$height = get_option('woo_full_thumb_height');
if( $home_boxes == 'On') { $small = TRUE; }
elseif ($home_boxes == 'Off') { $full = TRUE; }
else { $large_posts = intval($home_boxes); }
$counter = 0;
while (have_posts()) : the_post();
$counter++;
$post_class = 'full';
if( ($counter > $large_posts OR $small == TRUE) AND $full == FALSE)
{
$width = get_option('woo_boxed_thumb_width');
$height = get_option('woo_boxed_thumb_height');
if( $small == FALSE ) $counter = 1;
$small = true;
if ($counter%2 == 0 ) { $post_class = 'fr'; }
else { $post_class = 'fl'; }
}
?>
<div class="post-outer post <?php echo $post_class; ?>">
<div class="post-inner post-alt">
<?php woo_get_image('image',$width,$height); ?>
<p class="category-head cufon"><?php the_category(', ') ?></p>
<h2><?php the_title(); ?>" href="<?php the_permalink() ?>" rel="bookmark"><?php the_title(); ?></h2>
<p class="title-meta"><span class="comments-head"><?php comments_popup_link(__('0 Comments',woothemes), __('1 Comment',woothemes), __('% Comments',woothemes)); ?></span> <span class="date"><?php the_time('d F Y'); ?></span></p>
<?php if ($home_content == 'false') { ?>
<p><?php echo strip_tags(get_the_excerpt(), ''); ?></p>
<?php the_title(); ?>" href="<?php the_permalink() ?>"><?php _e('Want More?',woothemes); ?>
<?php } else { ?>
<?php the_content(__('Want More?',woothemes)); ?>
<?php } ?>
</div><!--/post-inner-->
</div><!--/post-->
Let me know if this is what you need. Thank you so much!