Numbering starts again from 00 after 99

Hello

Please see http://www.cancercommons.org/molecular-model-of-melanoma
We are attempting to footnote about 200 references
System starts renumbering from 00 after 99. Seems that the links in the text are correct, but the display isn’t. Any advice appreciated 🙂
Thanks

http://wordpress.org/extend/plugins/wp-footnotes/