Complete code if this helps at all..
<?php global $vigilance; ?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN"
"http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html xml:lang="en" xmlns="http://www.w3.org/1999/xhtml">
<head>
<?php if( is_front_page() ) : ?>
<title><?php bloginfo('name'); ?></title>
<?php elseif( is_404() ) : ?>
<title><?php _e('Page Not Found |', 'vigilance') ?> <?php bloginfo('name'); ?></title>
<?php elseif( is_search() ) : ?>
<title><?php printf(__ ("Search results for '%s'", "vigilance"), attribute_escape(get_search_query())); ?> | <?php bloginfo('name'); ?></title>
<?php else : ?>
<title><?php wp_title($sep = ''); ?> | <?php bloginfo('name');?></title>
<?php endif; ?>
<!-- Basic Meta Data -->
<meta name="copyright" content="Vigilance Theme Design: Copyright 2008 - 2009 Jestro LLC" />
<meta http-equiv="imagetoolbar" content="no" />
<meta http-equiv="Content-Type" content="<?php bloginfo('html_type'); ?>; charset=<?php bloginfo('charset'); ?>" />
<?php if((is_single() || is_category() || is_page() || is_home()) && (!is_paged())){} else {?>
<meta name="robots" content="noindex,follow" /><?php } ?>
<!-- Favicon -->
<link rel="shortcut icon" href="<?php bloginfo('stylesheet_directory'); ?>/images/favicon.ico" />
<!--Stylesheets-->
<link href="<?php bloginfo('stylesheet_url'); ?>" type="text/css" media="screen" rel="stylesheet" />
<!--[if lt IE 8]><link rel="stylesheet" type="text/css" media="screen" href="<?php bloginfo('template_url'); ?>/stylesheets/ie.css" /><![endif]-->
<!--[if lte IE 6]><link rel="stylesheet" type="text/css" media="screen" href="<?php bloginfo('template_url'); ?>/stylesheets/ie6.css" /><![endif]-->
<!--Wordpress-->
<link rel="alternate" type="application/rss+xml" title="<?php bloginfo('name'); ?> RSS Feed" href="<?php bloginfo('rss2_url'); ?>" />
<link rel="pingback" href="<?php bloginfo('pingback_url'); ?>" />
<!--WP Hook-->
<?php if ( is_singular() ) wp_enqueue_script( 'comment-reply' ); ?>
<?php wp_head(); ?>
</head>
<body <?php body_class(); ?>>
<div id="wrapper">
<div id="header" class="clear">
<?php if (is_home()) echo('<h1 id="title">'); else echo('<div id="title">');?>"><?php bloginfo('name'); ?><?php if (is_home()) echo('</h1>'); else echo('</div>');?>
<div id="description">
<h2><?php bloginfo('description'); ?></h2>
</div><!--end description-->
<div id="nav">
<?php if ($vigilance->hideHome() !== 'true') : ?>
<li class="page_item <?php if (is_front_page()) echo('current_page_item');?>">"><?php _e('Home', 'vigilance') ?>
<?php endif; ?>
<?php if ($vigilance->hidePages() !== 'true') : ?>
<?php wp_list_pages('title_li=&depth=1&exclude='. $vigilance->excludedPages()); ?>
<?php endif; ?>
<?php if ($vigilance->hideCategories() != 'true') : ?>
<?php wp_list_categories('title_li=&depth=1&exclude=' . $vigilance->excludedCategories()); ?>
<?php endif; ?>
</div><!--end nav-->
</div><!--end header-->
<div id="content" class="pad">
<?php if (is_file(STYLESHEETPATH . '/header-banner.php')) include(STYLESHEETPATH . '/header-banner.php'); else include(TEMPLATEPATH . '/header-banner.php'); ?>
<?php if (is_front_page()) : ?>
<?php if (is_file(STYLESHEETPATH . '/header-alertbox.php')) include(STYLESHEETPATH . '/header-alertbox.php'); else include(TEMPLATEPATH . '/header-alertbox.php'); ?>
<?php endif?>