Hey iyamdman,
I assume you are talking about the checkboxes similar to the posts page with different categories?
You need to link custom posts and register taxonomies (in functions.php)
add_action( 'init', 'build_taxonomies', 0 );
function build_taxonomies() {
register_taxonomy( 'taxonomy-name', array('cars'), array( 'hierarchical' => true, 'label' => 'Series Name', 'query_var' => true, 'rewrite' => true ) );
register_taxonomy( 'taxonomy-year', array('cars'), array( 'hierarchical' => true, 'label' => 'Series Year', 'query_var' => true, 'rewrite' => true ) );
register_taxonomy( 'taxonomy-color', array('cars'), array( 'hierarchical' => true, 'label' => 'Body Color', 'query_var' => true, 'rewrite' => true ) );
register_taxonomy( 'taxonomy-format', array('wheels'), array( 'hierarchical' => true, 'label' => 'Format', 'query_var' => true, 'rewrite' => true ) );
}
If you want to reuse taxonomies across multiple custom posts, you can add the support by specifying the names of each post_type.
For example: array('cars', 'wheels', 'page', 'post')
register_taxonomy( 'taxonomy-format', array('wheels', 'cars'), array( 'hierarchical' => true, 'label' => 'Format', 'query_var' => true, 'rewrite' => true ) );
The code above will display the taxonomy in both wheels and cars.
Hope that helps, if I am a bit confusing I can explain in better detail. Just need to know exactly what you want to achieve.