So after doing some research it seems that it's impossible to extend the core functionality of plugins w/o hacking the core plugin code assuming no filter is provided.
http://stackoverflow.com/questions/7503384/wordpress-overriding-a-function-in-a-plugin
http://wordpress.stackexchange.com/questions/26687/overwrite-a-plugin-function-in-functions-php
Is this correct? Can you not overwrite in functions.php by extending a class or just outright overwriting a function?
Sorry if this is obvious. In the testing I did I was unable to override plugin functions from my functions.php.
Thanks.