after reading loads of topics regarding my problem, i have yet to come to a solution for it.
The problem is: I have a similar structure in my host:
|-wordpress (WP files)
|-uploads (other files)
what I need to do is to let a php script included in wp pages access the files in /uploads and its subdirs (specifically, after filling a form i need to create a folder inside uploads and then upload files to it using the php script Uploadify + custom code).
How can I configure my .htaccess to exclude uploads and how can I let the script create the folders? I'm not talking about php programming as the script runs just fine when WP is not installed.
Keep in mind that I have permalinks enabled on WP.