Hi, Americaninlima,
If your host's server settings did not change when you did your upgrade, I don't think the problem is the same. The two messages you show indicate missing files, to me. If you did a backup before the upgrade, you should be able to upload the missing files.
If you suspect an .htaccess problem, you could also upload a copy from your previous installation to the appropriate blog directory (backup any existing file before overwriting it).
If you go back to the default permalink setting, do you see your posts?
Can you create a new post and see it? If so, perhaps your previous posts do not exist in the MySQL database anymore. You can use phpMyAdmin to browse the post tables and check this from your host's control panel, if there is one.
One last thing you might try, as a diagnostic: what happens if you switch to the default WordPress theme?
I could think up lots of other questions and things I might try if I were in your position. I hope this helps you a little in finding your problem. Please let us all know what your findings are. There is lots of expertise on this forum and someone may have other suggestions.