@steerpike
We’ll work with you to identify the issue. Are you using Windows or Linux hosting?
I’m using Linux hosting. I’ve reproduced the problem on all the domains associated with my hosting account. It only seems to affect WP installs that I set up according to the instructions here. I’ve tried giving WP its own directory both before and after the WP 2.8 upgrade. For the time being, I’ve just moved my entire install to the root, but I’d prefer to keep my domain root less messy by leaving the WP core files in their own directory.
@steerpike
We’ve used the “Giving WordPress its own directory” settings on a test WP site, and we could not recreate your issue.
You stated that you have upgraded to WordPress 2.8 manually, and GoDaddy.com now offers an automatic WordPress 2.8 upgrade for Hosting Connection installations. Therefore, we suggest that you use the automatic upgrade option to replace your current manual upgrade.
To upgrade automatically to 2.8 –
1. Access your hosting plan’s Hosting Control Center
2. Click on the “Your Applications” button
3. Click on the “My Applications” tab
4. Locate your WordPress installs and select the first one
5. Click on the “Install This Update” (gold) button
Once the update is completed you’ll receive a confirmation email.