I have had trouble using FD-Footnotes with my blog since upgrading to WP 2.7.
One of the problems encountered is that the text following the insertion of the footnote is super-script until a new paragraph marker.
Also, some of the footnotes appear as regular text right in the body of the text where I want the footnote inserted.
Is anyone else having these problems? It started happening after upgrading to 2.7 and once I enabled WP Super Cache.