Slight Variation on Multisite Media Upload Problem

Problem:
2 sites I recently created can upload media but the media does not display although I can find it on the server at:

/assets/sites/{# of site as name of folder}

Info
Running wordpress multisite, using subfolders, on bluehost.

.htaccess

# Use PHP5 Single php.ini as default
AddHandler application/x-httpd-php5s .php

# BEGIN W3TC Browser Cache
<IfModule mod_deflate.c>
    <IfModule mod_headers.c>
        Header append Vary User-Agent env=!dont-vary
    </IfModule>
        AddOutputFilterByType DEFLATE text/css text/x-component application/x-javascript application/javascript text/javascript text/x-js text/html text/richtext image/svg+xml text/plain text/xsd text/xsl text/xml image/x-icon application/json
    <IfModule mod_mime.c>
        # DEFLATE by extension
        AddOutputFilter DEFLATE js css htm html xml
    </IfModule>
</IfModule>
# END W3TC Browser Cache

# BEGIN WordPress

RewriteEngine On
RewriteBase /
RewriteRule ^index\.php$ - [L]

# add a trailing slash to /wp-admin
RewriteRule ^([_0-9a-zA-Z-]+/)?wp-admin$ $1wp-admin/ [R=301,L]

RewriteCond %{REQUEST_FILENAME} -f [OR]
RewriteCond %{REQUEST_FILENAME} -d
RewriteRule ^ - [L]
RewriteRule ^([_0-9a-zA-Z-]+/)?(wp-(content|admin|includes).*) $2 [L]
RewriteRule ^([_0-9a-zA-Z-]+/)?(.*\.php)$ $2 [L]
RewriteRule . index.php [L]

# END WordPress

# Start CloudFlare:lowermedia.net rewrite. Do not Edit
RewriteEngine On
RewriteCond %{HTTP_HOST} ^lowermedia.net
RewriteRule ^(.*)$ http://www.%{HTTP_HOST}/$1 [R=301,L]
# End CloudFlare rewrite.