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I just upgraded to 0.7, where did my keywords go?

Due to some changes that make SEO Auto Linker much more usable (an maintainable), keywords from versions before 0.7 must be migrated. There is a second plugin included called SEO Auto Linker Migrator that will do this for you. Just activate it and your done.

When I specify keywords, will they all get linked?

Sort of. If you keyword list is lorem, ipsum, the word lorem OR the word ipsum will be linked to the specified URL. If the content contains both lorem and `ipsum, they will only both be linked if you set the number of links per post to more than one for that keyword list.

Will this slow my site down?

If you add hundreds of keywords, the answer is probably yes. However, SEO auto linker makes use of several wp_cache functions which, when combined with a persistent caching plugin, should help speed things up. If you're running a large scale WordPress install, you should probably be using a caching plugin anyway.

This is breaking my HTML! What gives?

In order to keep things simple, SEO Auto Linker searches for some common elements in your HTML (headings, images, inputs, etc) and removes them before adding links, adding them back later. It can't predict every bit of HTML, unfortunately, so sometimes text in attributes or other text gets linked where it shouldn't.

Does this automatically link custom fields too?

Nope. Because custom fields (aka wp_postmeta) can be used for so many different things, it doesn't make sense to automatically link that content.